crn_builders

RL4CRN.utils.crn_builders

build_simple_IOCRN(species, production_input_map, output_species, degradation_input_map=None, dilution_map=None, production_map=None, solver=SolverCfg())

Helper to build and compile a starter IO-CRN.

PARAMETER	DESCRIPTION
species	List of species labels. TYPE: list
input_map	Dict mapping input species indices to input channel names.
dilution_map	Dict mapping species labels to their dilution rates. TYPE: dict DEFAULT: None
output_species	Label of the output species. TYPE: str
production_map	Dict mapping species labels to their production rates. TYPE: dict DEFAULT: None
solver	Solver configuration. TYPE: SolverCfg DEFAULT: SolverCfg()

RETURNS	DESCRIPTION
	Tuple (crn_template, species_labels).

build_logic_IOCRN(n_inputs, include_dilution=False, solver=SolverCfg(), n_support_species=0, dilution_rate=0.05)

Build and compile the template IO-CRN.

PARAMETER	DESCRIPTION
n_inputs	Number of inputs. TYPE: int
include_dilution	Whether to include dilution reactions. TYPE: bool DEFAULT: False
solver	Solver configuration. TYPE: SolverCfg DEFAULT: SolverCfg()
n_support_species	Number of support species to include. TYPE: int DEFAULT: 0
dilution_rate	Dilution rate for species. TYPE: float DEFAULT: 0.05

RETURNS	DESCRIPTION
	Tuple (crn_template, species_labels).